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Data for R package stoda

File Format Date

Position of genes on chromosoms

Gene position on chromosoms for stoda R package

ChrH.rds

R RDS regularly updated

List of gene aliases

List of gene aliases for stoda R package

DicoH.rds

R RDS regularly updated

Data for stoda R package

Contains Chrh.rds and DicoH.rds

StodaData.RData

R Rdata regularly updated

Tissue-specific genes

File Format Date

Average log RPKM (NCBI dataset), Homo sapiens

This file contains averaged logged RPKM values from NCBI dataset. File size 678M.

TISSUE_SPECIFIC_GENES_HS_ncbi_sra_expression_average_2018.03.02.csv

CSV 02-03-2018

Tissue-predominant genes (NCBI dataset), Homo sapiens

Selection of genes with predominant expression in different tissues. File size 9.5M.

TISSUE_SPECIFIC_GENES_HS_ncbi_sra_tissue_predominant_gene_2018.03.02.csv

CSV 02-03-2018

Tissue-restricted genes (NCBI dataset), Homo sapiens

Selection of genes with restricted expression in different tissues. File size 3.6M.

TISSUE_SPECIFIC_GENES_HS_ncbi_sra_tissue_restricted_gene_2018.03.02.csv

CSV 02-03-2018

Samples used to create tissue groups (NCBI dataset), Homo sapiens

This file contains samples used to calculate average RPKM values for each tissue group. File size 20K.

TISSUE_SPECIFIC_GENES_HS_ncbi_sra_expression_tissue_2018.03.02.csv

CSV 02-03-2018

Raw RPKM data (NCBI dataset)

This file contains raw RPKM values from NCBI (full_rpkm) as well as logged RPKM values (log_rpkm). File size 685M.

TISSUE_SPECIFIC_GENES_HS_ncbi_sra_expression_data_2018.03.02.csv

CSV 02-03-2018