EpiMed provides an API that allows programmatic access to available clinical data.
You can download an experimental grouping of one or several studies with a single command:
This command will generate an experimental grouping for requested GSE numbers in CSV format.
Additional parameters can also be downloaded as follows:
This code can be directly integrated into your R script:
url = "http://epimed.univ-grenoble-alpes.fr/database/expgroup/GSE30219" df = read.csv2(url, header=TRUE, sep=";", stringsAsFactors=FALSE, dec=".", na.strings="") df$relapsed = as.logical(df$relapsed) df$dead = as.logical(df$dead)
Download an experimental grouping for one study in CSV format:
Download additional parameters:
To download several studies, separate them by
EpiMed-specific studies can also be used: